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Molecular characterization and gene expression analysis of the pro-inflammatory cytokines IL-1beta and IL-8 in the South American fish Piaractus mesopotamicus challenged with Aeromonas dhakensis. Authorship: CARRIERO, M. M.; HENRIQUE SILVA, F.; MEIRA, C. M.; GATO, I. M. Q.; CAETANO, A. R.; LOBO, F. P.; ALVES, A. L.; VARELA, E. S.; MAIA, A. A. M. Abstract. In the present study, the complete characterization of cDNA and genomic sequences of IL-1 and IL-8, as well as the expression profile of these genes in the South American fish pacu (Piaractu... ... Repository: BDPA Publication year: 2020
Genome sequencing and de novo assembly of tambaqui (Colossoma macropomum). Authorship: CAETANO, A. R.; IANELLA, P.; VARELA, E. S.; PAIVA, S. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI NETO, A.; YAMAGISHI, M. E. B. The South American freshwater fish Tambaqui (Colossoma macropomum) is the most important native aquaculture species in Brazil. Current production levels are above 150,000 mt per year. Recent efforts t... ... Repository: BDPA Publication year: 2019
Single nucleotide variants and InDels identified from whole-genome re-sequencing of Guzerat, Gyr, Girolando and Holstein cattle breeds. Authorship: STAFUZZA, N. B.; ZERLOTINI NETO, A.; LOBO, F. P.; YAMAGISHI, M. E. B.; CHUD, T. C. S.; CAETANO, A. R.; MUNARI, D. P.; GARRICK, D. J.; MACHADO, M. A.; MARTINS, M. F.; CARVALHO, M. R.; COLE, J. B.; SILVA, M. V. G. B. Whole-genome re-sequencing, alignment and annotation analyses were undertaken for 12 sires representing four important cattle breeds in Brazil: Guzerat (multi-purpose), Gyr, Girolando and Holstein (da... ... Repository: BDPA Publication year: 2017
Genome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). Authorship: LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. The South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. R... ... Repository: BDPA Publication year: 2016
Design of the ATAQ peptide and its evaluation as an immunogen to develop a Rhipicephalus vaccine. Authorship: AGUIRRE, A. de A. R.; LOBO, F. P.; ANDREOTTI, R. Tick infestation may cause several problems including affecting domestic animal health and reducing the production of meat and milk, among others. Resistance to several classes of acaricides have been... ... Repository: BDPA Publication year: 2016
Detection of potential genetic variants affecting gene function in Guzerat cattle. Authorship: ZERLOTINI NETO, A.; STAFUZZA, N. B.; LOBO, F. P.; YAMAGISHI, M. E. B.; CHUD, T. C. S.; CAETANO, A. R.; MUNARI, D. P.; GARRICK, D. J.; MACHADO, M. A.; MARTINS, M. F.; CARVALHO, M. R.; SILVA, M. V. G. B. Guzerat is a dual-purpose breed recognized for important traits to its adaptation to adverse tropical environments such as resistance to parasites, heat tolerance and ability to intake forage with low... ... Repository: BDPA Publication year: 2016
POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes. Authorship: HONGO, J. A.; CASTRO, G. M. de; CINTRA, L. C.; ZERLOTINI, A.; LOBO, F. P. Abstract: Background: Detection of genes evolving under positive Darwinian evolution in genome-scale data is nowadays a prevailing strategy in comparative genomics studies to identify genes potentiall... ... Repository: BDPA Publication year: 2015
de novo genome assembly of the South American freshwater fish Tambaqui (Colossoma macropomum). Authorship: LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; VILLELA, L. C. V.; SILVA, N. M. A. da; PAIVA, S. R.; CAETANO, A. R. The Tambaqui (Colossoma macropomum) is a freshwater fish species naturally found in the Amazon river basin which has historically been widely exploited by community and commercial fishing. Recent effo... ... Repository: BDPA Publication year: 2015
POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes. Authorship: HONGO, J. A.; CASTRO, G. de; CINTRA, L.; ZERLOTINI, A.; LOBO, F. We present POTION, an open source, modular and end-to-end software for genome-scale detection of positive Darwinian selection in groups of homologous coding sequences. Our software represents a key st... ... Repository: BDPA Publication year: 2015
Daytime soybean transcriptome fluctuations during water deficit stress. Authorship: RODRIGUES, F. A.; FUGANTI-PAGLIARINI, R.; MARCOLINO-GOMES, J.; NAKAYAMA, T. J.; MOLINARI, H. B. C.; LOBO, F. P.; HARMON, F. G.; NEPOMUCENO, A. L. Repository: BDPA Publication year: 2015

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