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Structure and membrane interactions of the homodimeric antibiotic peptide homotarsinin. Authorship: VERLY, R. M.; RESENDE, J. M.; COELHO JUNIOR, E. F.; MAGALHÃES, M. T. Q. de; GUIMARÃES, C. F. C. R.; MUNHOZ, V. H. O.; BEMQUERER, M. P.; ALMEIDA, F. C. L.; SANTORO, M. M.; PILÓ-VELOSO, D.; BECHINGER, B. Repository: BDPA Publication year: 2017
Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors. Authorship: RIBEIRO, C.; TOGAWA, R. C.; NESHICH, I. A. P.; MAZONI, I.; MANCINI, A. L.; MINARDI, R. C. de M.; SILVEIRA, C. H. da; JARDINE, J. G.; SANTORO, M. M.; NESHICH, G. Background: Enzymes belonging to the same super family of proteins in general operate on variety of substrates and are inhibited by wide selection of inhibitors. In this work our main objective was to... ... Repository: BDPA Publication year: 2010
Protein cutoff scanning: a comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins. Authorship: SILVEIRA, C. H. da; PIRES, D. E. V.; MINARDI, R.; RIBEIRO, C.; VELOSO, C. J. M.; LOPES, J. C. D.; MEIRA JÚNIOR, W.; NESHICH, G.; RAMOS, C. H. I.; HABESCH, R.; SANTORO, M. M. In this study, we carried out a comparative analysis between two classical methodologies to prospect residue contacts in proteins: the traditional cutoff dependent (CD) approach and cutoff free Delaun... ... Repository: BDPA Publication year: 2009
Effect of cholesterol on the interaction of the amphibian antimicrobial peptide DD K with liposomes. Authorship: VERLY, R. M.; RODRIGUES, M. A.; DAGHASTANLI, K. R. P.; DENADAI, A. M. L.; CUCCOVIA, I. M.; BLOCH JÚNIOR, C.; FRÉZARD, F.; SANTORO, M. M.; PILÓ VELOSO, D.; BEMQUERER, M. P. Repository: BDPA Publication year: 2008
Protein structure topology comparison based on contact maps. Authorship: MELO, R. C.; MAZONI, I.; NESHICH, G.; SANTORO, M. M.; MEIRA JUNIOR, W. Short Abstract: Topologs (Topology Homologous) is a tool which is part of the Star Sting Suite (http://sms.cbi.cnptia.embrapa.br/SMS). It is a structural classification of proteins totally based on th... ... Repository: BDPA Publication year: 2006
Contacts as the key elements for comparing two protein structures. Authorship: MELO, R. C.; MAZONI, I.; NESHICH, G.; SANTORO, M. M.; MEIRA JÚNIOR, W. Short Abstract: TopSiMap (Topological Similarity Map) is and interactive tool which is part of the Star Sting Suite (http://sms.cbi.cnptia.embrapa.br/SMS).As contacts pattern is very conserved in each... ... Repository: BDPA Publication year: 2006

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