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A chromosome scale genome assembly of pensacola bahiagrass (paspalum notatum cv. pensacola) Authorship: ARAKAKI, J. E.; VIGNA, B. B. Z.; PESSOA FILHO, M. A. C. de P.; MUDADU, M. de A.; RIOS, E.; FAVERO, A. P. The development of new, cost-effective sequencing technologies, along with user-friendly computational tools, facilitates genomic studies of non-model species. Paspalum notatum is an important forage... ... Repository: BDPA Publication year: 2023
Applications of bioinformatics in agriculture. Authorship: ZERLOTINI NETO, A.; NHANI JÚNIOR, A.; VIEIRA, F. D.; CINTRA, L. C.; MUDADU, M. de A.; FALCÃO, P. R. K.; GIACHETTO, P. F. Introduction. LMB computational infrastructure to support bioinformatics projects applied to agriculture. Applications: ioinformatics and the tambaqui production chain; Bioinformatics in vaccine devel... ... Repository: BDPA Publication year: 2023
Plant Co-expression Annotation Resource: a web server for identifying targets for genetically modified crop breeding pipelines. Authorship: VIANA, M. J. A.; ZERLOTINI NETO, A.; MUDADU, M. de A. Abstract. The development of genetically modified crops (GM) includes the discovery of candidate genes through bioinformatics analysis using genomics data, gene expression, and others. Proteins of unk... ... Repository: BDPA Publication year: 2021
Machado: open source genomics data integration framework. Authorship: MUDADU, M. de A.; ZERLOTINI NETO, A. Abstract. Background: Genome projects and multiomics experiments generate huge volumes of data that must be stored, mined, and transformed into useful knowledge. All this information is supposed to be... ... Repository: BDPA Publication year: 2020
Allele-specific expression is widespread in Bos indicus muscle and affects meat quality candidate genes. Authorship: SOUZA, M. M. de; ZERLOTINI NETO, A.; ROCHA, M. I. P.; BRUSCADIN, J. J.; DINIZ, W. J. da S.; CARDOSO, T. F.; CESAR, A. S. M.; AFONSO, J.; ANDRADE, B. G. N.; MUDADU, M. de A.; MOKRY, F. B.; TIZIOTO, P. C.; OLIVEIRA, P. S. N. de; NICIURA, S. C. M.; COUTINHO, L. L.; REGITANO, L. C. de A. Differences between the expression of the two alleles of a gene are known as allele-specific expression (ASE), a common event in the transcriptome of mammals. Despite ASE being a source of phenotypic... ... Repository: BDPA Publication year: 2020
Aplicações da bioinformática na agricultura. Authorship: ZERLOTINI NETO, A.; NHANI JÚNIOR, A.; VIEIRA, F. D.; CINTRA, L. C.; MUDADU, M. de A.; FALCÃO, P. R. K.; GIACHETTO, P. F. Introdução. Infraestrutura computacional do LMB para suporte a projetos de bioinformática aplicada à agropecuária. Aplicações. A bioinformática e a cadeia produtiva do tambaqui. Bioinformática no dese... ... Repository: BDPA Publication year: 2020
Transcriptome analysis of Paspalum notatum and Paspalum vaginatum under water deficit condition. Authorship: ARAKAKI, J. E.; MALAGO JUNIOR, W.; MUDADU, M. de A.; SANTOS, P. M.; FAVERO, A. P.; BORRA, R. C.; VIGNA, B. B. Z. Drought is one of the abiotic stresses that most affect plant growth and productivity. Grasses of the genus Paspalum are successfully used as turf and forage in Australia, Argentina, Brazil and United... ... Repository: BDPA Publication year: 2019
Transcriptome analysis of paspalum vaginatum under drought condition. Authorship: VIGNA, B. B. Z.; ARAKAKI, J. E.; MALAGO JUNIOR, W.; MUDADU, M. de A.; SANTOS, P. M.; FAVERO, A. P.; BORRA, R. C. Paspalum vaginatum Swartz, also known as seashore paspalum, is a halophytic, diploid, self-incompatible, warm-season perennial grass, well adapted to coastal regions in tropical and subtropical enviro... ... Repository: BDPA Publication year: 2019
Network analysis uncovers putative genes affecting resistance to tick infestation in Braford cattle skin. Authorship: MORÉ, D. D.; CARDOSO, F. F.; MUDADU, M. de A.; MALAGO JUNIOR, W.; GULIAS GOMES, C. C.; SOLLERO, B. P.; IBELLI, A. M. G.; COUTINHO, L. L.; REGITANO, L. C. de A. Background: Genetic resistance in cattle is considered a suitable way to control tick burden and its consequent losses for livestock production. Exploring tick-resistant (R) and tick-susceptible (S) h... ... Repository: BDPA Publication year: 2019
Machado: a genomic data integration framework for Chado developed with Django. Authorship: MUDADU, M. de A.; ZERLOTINI NETO, A. Repository: BDPA Publication year: 2019

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