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Protein ligand contacts analyzed in an integrated environment with the other sequence and structure related parameters. Authorship: FALCÃO, P. R. K.; MAZONI, I.; YAMAGISHI, M. E. B.; BORRO, L. C.; JARDINE, J. G.; SANTOS, E. H. dos; OLIVEIRA, S. R. de M.; NESHICH, G. Short Abstract: The Protein Ligand Contacts ? the new STING module allows a user to compare the contacts established between the ligand and the protein together with the variety of other structure par... ... Repository: BDPA Publication year: 2006
Analysing protein-protein interface using JPIV. Authorship: YAMAGISHI, M. E. B.; FALCAO, P. R. K.; BORRO, L. C.; OLIVEIRA, S. R. de M.; SANTOS, E. H. dos; JARDINE, J. G.; VIEIRA, F. D.; MAZONI, I.; NARCISO, M. G.; NESHICH, G. Short Abstract: In this work we present Java Protein Interface Viewer (JPIV). It is a web-based software designed to visualize and analyse protein-protein interfaces. It uses Delaunay triangulation in... ... Repository: BDPA Publication year: 2006
BlueStar STING - a multiplatform environment for protein structure analysis. Authorship: KUSER, P.; YAMAGISHI, M. E. B.; OLIVEIRA, S. R. M.; MAZONI, I.; SANTOS, E. H. dos; VIEIRA, F. D.; JARDINE, J. G.; BORRO, L. C.; NESHICH, G. BlueStar STING is the latest version of the STING suite of programs and corresponding database. STING continues to build on what is considered its major asset: a principal DB of per-residue-reported d... ... Repository: BDPA Publication year: 2006
Predicting enzyme class from protein structural parameters and bagging predictors. Authorship: YAMAGISHI, M. E. B.; OLIVEIRA, S. R. M.; BORRO, L. C.; SANTOS, E. H.; JARDINE, J. G.; VIEIRA, F. D.; MAZONI, I.; NARCISO, M. G.; KUSER-FALCÃO, P. R.; NESHICH, G. Short Abstract: In this work we present a new method to classify enzymes that uses the STING_DB physical-chemical parameters and Bagging predictors. By building models based on "decision tree" and "ne... ... Repository: BDPA Publication year: 2006
Predicting enzyme class from protein structure using Bayesian classification. Authorship: BORRO, L. C.; OLIVEIRA, S. R. M.; YAMAGISHI, M. E. B.; MANCINI, A. L.; JARDINE, J. G.; MAZONI, I.; SANTOS, E. H. dos; HIGA, R. H.; KUSER, P. R.; NESHICH, G. ABSTRACT. Predicting enzyme class from protein structure parameters is a challenging problem in protein analysis. We developed a method to predict enzyme class that combines the strengths of statistic... ... Repository: BDPA Publication year: 2006
The Diamond Sting server. Authorship: NESHICH, G.; BORRO, L. C.; HIGA, R. H.; KUSER, P. R.; YAMAGISHI, M. E. B.; FRANCO, E. H.; KRAUCHENCO, J. N.; FILETO, R.; RIBEIRO, A. A.; BEZERRA, G. B. P.; VELLUDO, T. M.; JIMENEZ, T. S.; FURUKAWA, N.; TESHIMA, H.; KITAJIMA, K.; BAVA, A.; SARAI, A.; TOGAWA, R. C.; MANCINI, A. L. Diamond STING is a new version of the STING suite of programs for a comprehensive analysis of a relationship between protein sequence, structure, function and stability. We have added a number of new... ... Repository: BDPA Publication year: 2005

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